species:   Rhsol
pid:       PID0546
parent:    Rhi-milR-60
paralog:   
locus:     KB317723.1:122197-122265
matures:   ['CUAUAUCGCAAGCUUGAGAGA', 'UAUUUGGCGGCGAUAUAUCU']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317723.1:122197-122265

1 out of bounds
18 alignments
15 proper strand
14 stranded perfect matches

         ***************************************************         
UUAGUCUUACUCUAUUUGGCGGCGAUAUAUCUUAUCAACUAUAUCGCAAGCUUGAGAGAGCUUGGGAUA
...((((((((((....(((.((((((((..........))))))))..)))....))))..)))))).
--------------------------------------CUAUAUCGCAAGCUUGAGAGA---------- l=21 a=0 c
------------UAUUUGGCGGCGAUAUAUCU------------------------------------- l=20 a=0 c*
------------------------------------AACUAUAUCGCAAGCUUGAGAGAG--------- l=24 a=6 ma
-----------CUAUUUGGCGGCGAUAUAUCUUA----------------------------------- l=23 a=0 ma*

------------UAUUUGGCGGCGAUAUAUCUUA----------------------------------- l=22 a=1 
--------------UUUGGCGGCGAUAUAUCUUAUCAA------------------------------- l=24 a=1 
-----------------------------------CAACUAUAUCGCAAGCUUGAGAG----------- l=23 a=2 
------------------------------------AACUAUAUCGCAAGCUUGAGAGA---------- l=23 a=1 
------------------------------------AACUAUAUCGCAAGCUUaAGAGAG--------- l=24 a=1 
------------------------------------AACUAUAUCGCAAGCUUGAGAGAG--------- l=24 a=6 (ma)
-------------------------------------ACUAUAUCGCAAGCUUGAGAGAG--------- l=23 a=1 
---------------------------------------UAUAUCGCAAGCUUGAGAGAG--------- l=21 a=2 

mb-01010
ax-1001011
ku-01
ss-111111101100
fn-111
